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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009629052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 281aa MW: 31984.7 Da PI: 4.8528 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.3 | 3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +++ G g+W++ ++ g+ R++k+c++rw +yl XP_009629052.1 14 KGPWTPEEDQILVSYIQTNGHGNWRALPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.3e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l XP_009629052.1 67 RGNFTREEEDSIIQLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.528 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.8E-31 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.45E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.108 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MVRAPCCEKM GLKKGPWTPE EDQILVSYIQ TNGHGNWRAL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TREEEDSIIQ LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKNYQ 120 PPQNSKRHSK NNLDSKAPST SQTFNNSDNF SNIQEDINGP VTGPNSPQRS SSEMSTVTVD 180 STAMTTITID DQNMFKQLDE MDSSENFIPE IDESFWTDDL STSDNSTFGM EGTGGELQVQ 240 FPFSSVKQES MDMVGAKLED DMDFWYNVFI KSGDLLDLPE F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-27 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 4e-27 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 4e-27 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 4e-27 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00375 | DAP | Transfer from AT3G23250 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028649 | 0.0 | AB028649.1 Nicotiana tabacum gene for myb-related transcription factor LBM1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009629052.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Refseq | XP_016490215.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | Q9SLT2 | 0.0 | Q9SLT2_TOBAC; Myb-related transcription factor LBM1 | ||||
STRING | PGSC0003DMT400044362 | 1e-163 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 7e-94 | myb domain protein 15 |